| variable | raw | site_filtered | gt_filtered |
|---|---|---|---|
| TOTAL_SNPS | 16,643,754.00 | 9,115,052.00 | 7,064,770.00 |
| NUM_IN_DB_SNP | 12,117,419.00 | 8,486,322.00 | 6,621,301.00 |
| NOVEL_SNPS | 4,526,335.00 | 628,730.00 | 443,469.00 |
| PCT_DBSNP | 0.73 | 0.93 | 0.94 |
| DBSNP_TITV | 1.94 | 2.07 | 2.19 |
| NOVEL_TITV | 1.07 | 1.53 | 1.64 |
| TOTAL_INDELS | 3,454,237.00 | 0.00 | 0.00 |
| TOTAL_MULTIALLELIC_SNPS | 856,605.00 | 0.00 | 0.00 |